Multi-modal Large Language Models (MLLMs) excel at single-image tasks but struggle with multi-image understanding due to cross-modal misalignment, leading to hallucinations (context omission, conflation, and misinterpretation). Existing methods using Direct Preference Optimization (DPO) constrain optimization to a solitary image reference within the input sequence, neglecting holistic context modeling. To address this, we propose Context-to-Cue Direct Preference Optimization (CcDPO), a multi-level preference optimization framework that enhances per-image perception in multi-image settings by zooming into visual clues—from sequential context to local details. Our approach features two sequentially dependent components: (i) Context-Level Optimization: By introducing low-cost sequence preference pairs, we optimize the model to distinguish between complete and disrupted multi-image contexts, thereby correcting cognitive biases in MLLMs’ multi-image understanding. (ii) Needle-Level Optimization: By integrating region-specific visual prompts with multimodal preference supervision, we direct the model’s attention to critical visual details, effectively suppressing perceptual biases toward fine-grained visual information. To support scalable optimization, we also construct MultiScope-42k, an automatically generated multi-image dataset with hierarchical preference pairs. Experiments show that CcDPO significantly reduces hallucinations and yields consistent performance gains across general single- and multi-image tasks. Codes are available at https://github.com/LXDxmu/CcDPO.